Remove dependency injection from core module and data module from presentation-widget module

Includes side effects:
- No longer need to restart app for user agent string change to take effect
- parseAs extension function requires a Json instance in the calling context, which doesn't necessarily need to be the default one provided by Injekt

(cherry picked from commit 93523ef50b80ef294866bfb0da54e236cdf2d9f6)

# Conflicts:
#	app/src/main/java/eu/kanade/tachiyomi/data/updater/AppUpdateChecker.kt
#	app/src/main/java/eu/kanade/tachiyomi/extension/api/ExtensionGithubApi.kt
#	core/src/main/java/eu/kanade/tachiyomi/network/NetworkHelper.kt
#	core/src/main/java/eu/kanade/tachiyomi/network/OkHttpExtensions.kt
#	domain/build.gradle.kts
#	source-api/build.gradle.kts

data/src/main/java/tachiyomi/data/updates/UpdatesRepositoryImpl.kt

@@ -8,9 +8,19 @@ import tachiyomi.domain.updates.model.UpdatesWithRelations
 import tachiyomi.domain.updates.repository.UpdatesRepository
 
 class UpdatesRepositoryImpl(
-    val databaseHandler: DatabaseHandler,
+    private val databaseHandler: DatabaseHandler,
 ) : UpdatesRepository {
 
+    override suspend fun awaitWithRead(read: Boolean, after: Long): List<UpdatesWithRelations> {
+        return databaseHandler.awaitList {
+            updatesViewQueries.getUpdatesByReadStatus(
+                read = read,
+                after = after,
+                mapper = updateWithRelationMapper,
+            )
+        }
+    }
+
     override fun subscribeAll(after: Long): Flow<List<UpdatesWithRelations>> {
         return databaseHandler.subscribeToList {
             updatesViewQueries.updates(after, updateWithRelationMapper)
@@ -19,4 +29,14 @@ class UpdatesRepositoryImpl(
                 .map(updatesViewMapper)
         }
     }
+
+    override fun subscribeWithRead(read: Boolean, after: Long): Flow<List<UpdatesWithRelations>> {
+        return databaseHandler.subscribeToList {
+            updatesViewQueries.getUpdatesByReadStatus(
+                read = read,
+                after = after,
+                mapper = updateWithRelationMapper,
+            )
+        }
+    }
 }